Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0804552.2e.2a with 2 members (Large ribosomal subunit protein uL6 alpha-beta domain-containing protein)

Eukaryota / Viridiplantae / Streptophyta / Streptophytina / Embryophyta / Tracheophyta / Euphyllophyta /

... /

Spermatophyta / Acrogymnospermae /

Pinidae /

Completeness score: 0.50

Select a Tab

‹

Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

70.3%

This HOG has 16 similar HOGs:

HOG ID	Deepest level	HOG size	Prevalence	Similarity
HOG:E0990699	Bacteria	1948	99.5%	2
HOG:E1027273	LUCA	1401	97.7%	2
HOG:E0438282	Aspergillaceae	4	100.0%	2
HOG:E0718566	Laurasiatheria	4	50.0%	2
HOG:E0232838	asterids	3	66.7%	2
HOG:E0727226	Eutheria	3	100.0%	2
HOG:E0830420	Eukaryota	31	90.3%	1
HOG:E0826196	Eukaryota	19	89.5%	1
HOG:E0290113	Mesangiospermae	7	100.0%	1
HOG:E0140565	Plasmodium	6	83.3%	1
HOG:E0834294	Eukaryota	6	100.0%	1
HOG:E0245412	Brassica	4	100.0%	1
HOG:E0320019	Streptophyta	4	100.0%	1
HOG:E0473972	leotiomyceta	4	100.0%	1
HOG:E0043743	Rhodophyta	3	100.0%	1

Showing 1 to 15 of 15 rows rows per page

HOG:E0804552.2e.2a with 2 members (Large ribosomal subunit protein uL6 alpha-beta domain-containing protein)

Select a hog at a lower level

Based on:

This HOG has 16 similar HOGs: